VanML - 2024 Biostatistics Workshop

Lecture - Phylogenetic applications to real-world data

Activity - BEAST interactive session

Instructors

Dr. Jessica Stockdale
Dr. Ben Sobkowiak

Objectives

In this activity you will be carrying out the following analyses:

• Full Bayesian reconstruction of timed phylogenies from sequence data with BEAST2
• Phylodynamic analysis with BEAST2

Required Programs

BEAST2 (BEAUti, BEAST, TreeAnnotator)
Tracer
FigTree

Required Data

TB_cluster.fasta
TB_cluster.txt

This site is open source. Improve this page.